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Displaying 0 - 13
| Scaffold 1 |
| Feature |
Type |
Strand |
Start |
Stop |
Confidence |
Note + |
ORNL |
BlastP |
Edit |
| 1.111 | CDS | + | 1 | 1111 | 1 |
1.111 | None | None | Edit |
| 1.11a | tRNA | + | 1 | 1232 | 1 |
1.11a | None | None | Edit |
| 1 | Component | | 1 | 737 | 0 |
1 | None | None | Edit |
| Ref1.1 | Refgene | - | 47 | 736 | 0 |
Ref1.1 gene: pcaK ; label: or0001 ; note "11"; | ORNL | BlastP | Ref. |
| Ref1.2 | RefCDS | - | 47 | 736 | 0 |
Ref1.2 gene: pcaK ; label: or0001 ; note "GENE MODEL=critica; generation=complement(47..652): ; glimmer=complement(47..50): ; product: possible 4-hydroxybenzoate transporter PcaK " ; function "KEGG top hit: 'pae:PA0235 pcaK category=Unassigned, evalue=2e-23, 41% identity hit'; function: PFAM: 'similar to model=DUF6 description=Integral membrane protein DUF6 evalue=2.6 score=-35.3' " ; function "COGs: 'Best hit=PA0235 evalue=7e-19 score=92 category=G group=COG0477 Permeases of the major facilitator superfamily' ; codon_start: 1; transl_table: 11; evidence: not; note: NR Hit: similar to (NC_002516) 4-hydroxybenzoate transporter PcaK [Pseudomonas aeruginosa] pir||G83616 4-hydroxybenzoate transporter PcaK PA0235 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG03624.1|AE004461_7 (AE004461) 4-hyd-TRUNCATED-, evalue=5.00e-23, 41% identity hit ; | ORNL | BlastP | Ref. |
| 1.1 | gene | - | 47 | 736 | 5 |
1.1 gene: pcaK ; label: or0001; Remark: good BLAST e value, but is internal fragment of gene; | ORNL | BlastP | Edit |
| 1.2 | CDS | - | 47 | 736 | 5 |
1.2 gene: pcaK ; label: or0001; product: NR Hit: 'similar to (NC_002516) 4-hydroxybenzoate transporter PcaK [Pseudomonas aeruginosa] pir||G83616 4-hydroxybenzoate transporter PcaK PA0235 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG03624.1|AE004461_7 (AE004461) 4-hyd-TRUNCATED-, evalue=5.00e-23, 41% identity hit ; possible 4-hydroxybenzoate transporter PcaK "; function: PFAM: 'similar to model=DUF6 description=Integral membrane protein DUF6 evalue=2.6 score=-35.3' " ; COGs: 'Best hit=PA0235 evalue=7e-19 score=92 category=G group=COG0477 Permeases of the major facilitator superfamily' ; KEGG top hit: 'pae:PA0235 pcaK category=Unassigned, evalue=2e-23, 41% identity hit'; codon_start: 1; transl_table: 11; evidence: not; note: GENE MODEL=critica; Remark: partial fragment, but good BLAST hit; much better match to pcaK on contig 66:32883..32317; e-136.; | ORNL | BlastP | Edit |
| Ref1.3 | Refmisc_feature | - | 116 | 181 | 0 |
Ref1.3 FeatFlags: 0x580; note: 11; note: 3 probable transmembrane helices predicted by TMHMM2.0; | None | None | Ref. |
| 1.3 | misc_feature | - | 116 | 181 | 0 |
1.3 FeatFlags: 0x580; note: 11; note: 3 probable transmembrane helices predicted by TMHMM2.0; | None | None | Edit |
| Ref1.3 | Refmisc_feature | - | 203 | 268 | 0 |
Ref1.3 FeatFlags: 0x504; | None | None | Ref. |
| 1.3 | misc_feature | - | 203 | 268 | 0 |
1.3 FeatFlags: 0x504; | None | None | Edit |
| Ref1.3 | Refmisc_feature | - | 314 | 379 | 0 |
Ref1.3 FeatFlags: 0x504; | None | None | Ref. |
| 1.3 | misc_feature | - | 314 | 379 | 0 |
1.3 FeatFlags: 0x504; | None | None | Edit |
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