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Displaying 0 - 9
| Scaffold 17 |
| Feature |
Type |
Strand |
Start |
Stop |
Confidence |
Note + |
ORNL |
BlastP |
Edit |
| Ref17.1 | Refgene | + | 1 | 627 | 0 |
Ref17.1 gene: ybhP ; label: or0007 ; note "13"; | ORNL | BlastP | Ref. |
| Ref17.2 | RefCDS | + | 1 | 627 | 0 |
Ref17.2 gene: ybhP ; label: or0007 ; note "GENE MODEL=critica; product: conserved hypothetical protein; function: KEGG top hit: 'eco:b0790 ybhP SP=YBHP_ECOLI category=Unassigned, evalue=1e-123, 100% identity hit'; function: PFAM: 'similar to model=Exo_endo_phos description=Endonuclease/Exonuclease/phosphatase fa evalue=1.3e-12 score=51.4' " ; function "COGs: 'Best hit=ZybhP evalue=e-124 score=441 category=R group=COG3568 Metal-dependent hydrolase' ; codon_start: 1; transl_table: 11; evidence: not; note: NR Hit: similar to (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7 EDL933] ref|NP_308895.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7] ref|NP_415311.1| (NC_000913) orf, hypothetical protein [Escherichia coli -TRUNCATED-, evalue=1.00e-123, 100% identity hit ; generation=16..627: ; glimmer=13..627: ; | ORNL | BlastP | Ref. |
| 17.1 | gene | + | 1 | 627 | 5 |
17.1 gene: ybhP ; label: or0007 ; Remark: This is the 3'end of ybhP (aa 46-253/253); ybhP is also found on contig 84:35697..34969, but nt sequence is different from seq on contig 17; | ORNL | BlastP | Edit |
| 17.2 | CDS | + | 1 | 627 | 5 |
17.2 gene: ybhP ; label: or0007 ; product: NR Hit: 'similar to (NC_002655) orf, hypothetical protein [Escherichia coli O157:H7 EDL933] ref|NP_308895.1| (NC_002695) hypothetical protein [Escherichia coli O157:H7] ref|NP_415311.1| (NC_000913) orf, hypothetical protein [Escherichia coli -TRUNCATED-, evalue=1.00e-123, 100% identity hit '"; function: KEGG top hit: 'eco:b0790 ybhP SP=YBHP_ECOLI category=Unassigned, evalue=1e-123, 100% identity hit'; function: PFAM: 'similar to model=Exo_endo_phos description=Endonuclease/Exonuclease/phosphatase fa evalue=1.3e-12 score=51.4'; function: COGs: 'Best hit=ZybhP evalue=e-124 score=441 category=R group=COG3568 Metal-dependent hydrolase' ; codon_start: 1; transl_table: 11; evidence: not; note: GENE MODEL=critica
generation 16-627; glimmer 13-627; Remark: This is the 3'end of ybhP (aa 46-253/253); ybhP is also found on contig 84:35697..34969, but nt sequence is different from seq on contig 17; | ORNL | BlastP | Edit |
| 17 | Component | + | 1 | 1127 | 5 |
17 | None | None | Edit |
| Ref17.3 | Refgene | + | 624 | 1115 | 0 |
Ref17.3 gene: ybhO ; label: or0008 ; note "11"; | ORNL | BlastP | Ref. |
| Ref17.4 | RefCDS | + | 624 | 1115 | 0 |
Ref17.4 gene: ybhO ; label: or0008 ; note "GENE MODEL=generation; product: putative synthetase [SP:YBHO_ECOLI] " ; function "KEGG top hit: 'eco:b0789 ybhO SP=YBHO_ECOLI category=Unassigned, evalue=3e-74, 87% identity hit'; function: PFAM: 'similar to model=PLDc description=Phospholipase D. Active site motif evalue=0.18 score=9.8' " ; function "COGs: 'Best hit=ZybhO evalue=3e-71 score=264 category=I group=COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes' ; codon_start: 1; transl_table: 11; evidence: not; note: NR Hit: similar to (NC_002655) putative synthetase [Escherichia coli O157:H7 EDL933] ref|NP_308894.1| (NC_002695) cardiolipin synthetase [Escherichia coli O157:H7] ref|NP_415310.1| (NC_000913) putative synthetase [Escherichia coli K12] sp|P7-TRUNCATED-, evalue=7.00e-74, 87% identity hit ; glimmer=624..1115: ; critica=624..1115: ; | ORNL | BlastP | Ref. |
| 17.3 | gene | + | 624 | 1115 | 5 |
17.3 gene: ybhO ; label: or0008 ; | ORNL | BlastP | Edit |
| 17.4 | CDS | + | 624 | 1115 | 5 |
17.4 gene: ybhO ; label: or0008 ; product: NR Hit: 'similar to (NC_002655) putative synthetase [Escherichia coli O157:H7 EDL933] ref|NP_308894.1| (NC_002695) cardiolipin synthetase [Escherichia coli O157:H7] ref|NP_415310.1| (NC_000913) putative synthetase [Escherichia coli K12] sp|P7-TRUNCATED-, evalue=7.00e-74, 87% identity hit; putative synthetase [SP:YBHO_ECOLI] ; function: KEGG top hit: 'eco:b0789 ybhO SP=YBHO_ECOLI category=Unassigned, evalue=3e-74, 87% identity hit; PFAM: 'similar to model=PLDc description=Phospholipase D. Active site motif evalue=0.18 score=9.8' " ; function "COGs: 'Best hit=ZybhO evalue=3e-71 score=264 category=I group=COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes' ; codon_start: 1; transl_table: 11; evidence: not; note: GENE MODEL=generation; Remark: This is the 5'end of ybhO aa 1-161/397; there is a ybhO on contig 84:34960..33770, but nt sequence is different from contig 17; | ORNL | BlastP | Edit |
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