| Scaffold 22 |
| Feature |
Type |
Strand |
Start |
Stop |
Confidence |
Note + |
ORNL |
BlastP |
Edit |
| Ref22.1 | Refgene | + | 3 | 806 | 0 |
Ref22.1 gene: or0015; label: or0015; note: 9; | ORNL | BlastP | Ref. |
| Ref22.2 | RefCDS | + | 3 | 806 | 0 |
Ref22.2 gene: or0015; label: or0015; product: "putative dipeptide transport system permease protein " ; function "KEGG top hit: 'pae:PA4503 category=Environmental Information Processing; function: PFAM: 'similar to model=BPD_transp description=Binding-protein-dependent transport s evalue=4.8e-10 score=42.8' " ; function "COGs: 'Best hit=PA4503 evalue=5e-99 score=358 category=E group=COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components' ; codon_start: 1; transl_table: 11; evidence: not; note: "GENE MODEL=critica; note: NR Hit: 'similar to (NC_002516) probable permease of ABC transporter [Pseudomonas aeruginosa] pir||C83082 probable permease of ABC transporter PA4503 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG07891.1|AE004864_3 (AE004864) p-TRUNCATED-, evalue=1.00e-113, 78% identity hit '; generation=195..806: ; glimmer=42..806;: "; Membrane: Transport; ABC: transporters, prokaryotic [PATH:pae02010] , evalue=1e-114, 78% identity hit'"; | ORNL | BlastP | Ref. |
| 22.1 | gene | + | 3 | 806 | 0 |
22.1 gene: or0015; label: or0015; note: 9; | ORNL | BlastP | Edit |
| 22.2 | CDS | + | 3 | 806 | 0 |
22.2 gene: or0015; label: or0015; product: "putative dipeptide transport system permease protein " ; function "KEGG top hit: 'pae:PA4503 category=Environmental Information Processing; function: PFAM: 'similar to model=BPD_transp description=Binding-protein-dependent transport s evalue=4.8e-10 score=42.8' " ; function "COGs: 'Best hit=PA4503 evalue=5e-99 score=358 category=E group=COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components' ; codon_start: 1; transl_table: 11; evidence: not; note: "GENE MODEL=critica; note: NR Hit: 'similar to (NC_002516) probable permease of ABC transporter [Pseudomonas aeruginosa] pir||C83082 probable permease of ABC transporter PA4503 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG07891.1|AE004864_3 (AE004864) p-TRUNCATED-, evalue=1.00e-113, 78% identity hit '; generation=195..806: ; glimmer=42..806;: "; Membrane: Transport; ABC: transporters, prokaryotic [PATH:pae02010] , evalue=1e-114, 78% identity hit'"; | ORNL | BlastP | Edit |
| Ref22.10 | Refmisc_feature | + | 96 | 164 | 0 |
Ref22.10 FeatFlags: 0x500; note: 11; note: 5 probable transmembrane helices predicted by TMHMM2.0; | None | None | Ref. |
| 22.10 | misc_feature | + | 96 | 164 | 0 |
22.10 FeatFlags: 0x500; note: 11; note: 5 probable transmembrane helices predicted by TMHMM2.0; | None | None | Edit |
| Ref22.10 | Refmisc_feature | + | 201 | 269 | 0 |
Ref22.10 FeatFlags: 0x504; | None | None | Ref. |
| 22.10 | misc_feature | + | 201 | 269 | 0 |
22.10 FeatFlags: 0x504; | None | None | Edit |
| Ref22.10 | Refmisc_feature | + | 387 | 455 | 0 |
Ref22.10 FeatFlags: 0x504; | None | None | Ref. |
| 22.10 | misc_feature | + | 387 | 455 | 0 |
22.10 FeatFlags: 0x504; | None | None | Edit |
| Ref22.10 | Refmisc_feature | + | 561 | 629 | 0 |
Ref22.10 FeatFlags: 0x504; | None | None | Ref. |
| 22.10 | misc_feature | + | 561 | 629 | 0 |
22.10 FeatFlags: 0x504; | None | None | Edit |
| Ref22.10 | Refmisc_feature | + | 711 | 779 | 0 |
Ref22.10 FeatFlags: 0x504; | None | None | Ref. |
| 22.10 | misc_feature | + | 711 | 779 | 0 |
22.10 FeatFlags: 0x504; | None | None | Edit |
| Ref22.9 | Refmisc_feature | + | 817 | 954 | 0 |
Ref22.9 note: 11; note: Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 0.654) with cleavage site probability 0.472 at residue 46; | None | None | Ref. |
| 22.9 | misc_feature | + | 817 | 954 | 0 |
22.9 note: 11; note: Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 0.654) with cleavage site probability 0.472 at residue 46; | None | None | Edit |
| Ref22.11 | Refmisc_feature | + | 904 | 972 | 0 |
Ref22.11 FeatFlags: 0x500; note: 11; note: 5 probable transmembrane helices predicted by TMHMM2.0; | None | None | Ref. |
| 22.11 | misc_feature | + | 904 | 972 | 0 |
22.11 FeatFlags: 0x500; note: 11; note: 5 probable transmembrane helices predicted by TMHMM2.0; | None | None | Edit |
| Ref22.11 | Refmisc_feature | + | 1117 | 1185 | 0 |
Ref22.11 FeatFlags: 0x504; | None | None | Ref. |
| 22.11 | misc_feature | + | 1117 | 1185 | 0 |
22.11 FeatFlags: 0x504; | None | None | Edit |
