| Scaffold 24 |
| Feature |
Type |
Strand |
Start |
Stop |
Confidence |
Note + |
ORNL |
BlastP |
Edit |
| Ref24.1 | Refgene | + | 528 | 902 | 0 |
Ref24.1 gene: TRm10-1b-2 ; label: or0021 ; note "11"; | ORNL | BlastP | Ref. |
| Ref24.2 | RefCDS | + | 528 | 902 | 0 |
Ref24.2 gene: TRm10-1b-2 ; label: or0021 ; note "GENE MODEL=generation; product: putative transposase of insertion sequence ISRm10-1, orfB C-terminus protein " ; function "KEGG top hit: 'sme:SMb21046 TRm10-1b-2 category=Unassigned, evalue=7e-39, 63% identity hit'; function: PFAM: 'similar to model=myb_DNA-binding description=Myb-like DNA-binding domain evalue=3.3 score=-4.5' " ; function "COGs: 'Best hit=mll9021 evalue=1e-13 score=72 category=L group=COG3335 Predicted transposase' ; codon_start: 1; transl_table: 11; evidence: not; note: NR Hit: similar to (NC_003078) putative transposase of insertion sequence ISRm10-1, orfB C-terminus protein [Sinorhizobium meliloti] emb|CAC49025.1| (AL603644) putative transposase of insertion sequence ISRm10-1, orfB C-terminus pr-TRUNCATED-, evalue=2.00e-38, 63% identity hit ; glimmer=528..902: ; critica=528..902: ; | ORNL | BlastP | Ref. |
| 24.1 | gene | + | 528 | 902 | 5 |
24.1 gene: TRm10-1b-2 ; label: or0021; | ORNL | BlastP | Edit |
| 24.2 | CDS | + | 528 | 902 | 5 |
24.2 gene: TRm10-1b-2 ; label: or0021; product: putative transposase of insertion sequence ISRm10-1, orfB C-terminus protein "NR Hit: 'similar to (NC_003078) putative transposase of insertion sequence ISRm10-1, orfB C-terminus protein [Sinorhizobium meliloti] emb|CAC49025.1| (AL603644) putative transposase of insertion sequence ISRm10-1, orfB C-terminus pr-TRUNCATED-, evalue=2.00e-38, 63% identity hit '"; function: "KEGG top hit: 'sme:SMb21046 TRm10-1b-2 category=Unassigned, evalue=7e-39, 63% identity hit'; function: PFAM: 'similar to model=myb_DNA-binding description=Myb-like DNA-binding domain evalue=3.3 score=-4.5'; function: "COGs: 'Best hit=mll9021 evalue=1e-13 score=72 category=L group=COG3335 Predicted transposase' ; codon_start: 1; transl_table: 11; evidence: not_experimental; note: "GENE MODEL=generation. others agree. model is 38aa shorter than best hit.; | ORNL | BlastP | Edit |
| Ref24.3 | Refgene | + | 1223 | 1513 | 0 |
Ref24.3 gene: or0022; label: or0022; note: 0; | ORNL | BlastP | Ref. |
| Ref24.4 | RefCDS | + | 1223 | 1513 | 0 |
Ref24.4 gene: or0022; label: or0022; product: hypothetical; codon_start: 1; transl_table: 11; evidence: not; note: GENE MODEL=glimmer; ; | ORNL | BlastP | Ref. |
| 24.3 | gene | + | 1223 | 1513 | 0 |
24.3 gene: or0022; label: or0022; note: 0; | ORNL | BlastP | Edit |
| 24.4 | CDS | + | 1223 | 1513 | 0 |
24.4 gene: or0022; label: or0022; product: hypothetical; codon_start: 1; transl_table: 11; evidence: not; note: GENE MODEL=glimmer; ; | ORNL | BlastP | Edit |
| 24 | Component | | 1 | 1743 | 0 |
24 | None | None | Edit |
| Ref24.5 | Refgene | - | 923 | 1243 | 0 |
Ref24.5 gene: or0024; label: or0024; note: 11; | ORNL | BlastP | Ref. |
| Ref24.6 | RefCDS | - | 923 | 1243 | 0 |
Ref24.6 gene: or0024; label: or0024; product: possible HAT (Half-A-TPR) repeat " ; function "PFAM: 'similar to model=HAT description=HAT (Half-A-TPR) repeat evalue=3.3 score=3.9' ; codon_start: 1; transl_table: 11; evidence: not; note: "GENE MODEL=critica; generation=complement(923..1246): ; glimmer=complement(923..1246);: "; | ORNL | BlastP | Ref. |
| 24.5 | gene | - | 923 | 1243 | 0 |
24.5 gene: or0024; label: or0024; note: 11; | ORNL | BlastP | Edit |
| 24.6 | CDS | - | 923 | 1243 | 0 |
24.6 gene: or0024; label: or0024; product: possible HAT (Half-A-TPR) repeat " ; function "PFAM: 'similar to model=HAT description=HAT (Half-A-TPR) repeat evalue=3.3 score=3.9' ; codon_start: 1; transl_table: 11; evidence: not; note: "GENE MODEL=critica; generation=complement(923..1246): ; glimmer=complement(923..1246);: "; | ORNL | BlastP | Edit |
