| Scaffold 26 |
| Feature |
Type |
Strand |
Start |
Stop |
Confidence |
Note + |
ORNL |
BlastP |
Edit |
| Ref26.1 | Refgene | - | 2096 | 2884 | 0 |
Ref26.1 gene: or0031; label: or0031; note: 11; | ORNL | BlastP | Ref. |
| Ref26.2 | RefCDS | - | 2096 | 2884 | 0 |
Ref26.2 gene: or0031; label: or0031; product: insertion sequence IS100, ATP-binding protein " ; function "KEGG top hit: 'ype:YPO2517 category=Unassigned, evalue=9e-78, 64% identity hit'; function: PFAM: 'similar to model=IstB description=IstB-like ATP binding protein evalue=4e-89 score=305.5' " ; function "COGs: 'Best hit=Rv2944 evalue=5e-36 score=149 category=L group=COG1484 DNA replication protein' ; codon_start: 1; transl_table: 11; evidence: not; note: "GENE MODEL=critica; note: NR Hit: 'similar to (AF450275) putative transposition helper protein [Ralstonia solanacearum], evalue=7.00e-78, 71% identity hit '; generation=complement(2096..2698): ; glimmer=complement(2096..2698);: "; | ORNL | BlastP | Ref. |
| 26.1 | gene | - | 2096 | 2884 | 5 |
26.1 gene: or0031; label: or0031; | ORNL | BlastP | Edit |
| 26.2 | CDS | - | 2096 | 2884 | 5 |
26.2 gene: or0031; label: or0031; product: insertion sequence IS100, ATP-binding protein "NR Hit: 'similar to (AF450275) putative transposition helper protein [Ralstonia solanacearum], evalue=7.00e-78, 71% identity hit '; function: "KEGG top hit: 'ype:YPO2517 category=Unassigned, evalue=9e-78, 64% identity hit'; function: PFAM: 'similar to model=IstB description=IstB-like ATP binding protein evalue=4e-89 score=305.5' "; function: "COGs: 'Best hit=Rv2944 evalue=5e-36 score=149 category=L group=COG1484 DNA replication protein' ; codon_start: 1; transl_table: 11; evidence: not_experimental; note: "GENE MODEL=critica. Uses a GGG (!!!) at 2884. Model looks like a motif or C terminal half of best hit. glimmer and generation use a GTG at 2698.; | ORNL | BlastP | Edit |
| 26 | Component | | 1 | 2886 | 0 |
26 | None | None | Edit |
| Ref26.5 | Refgene | - | 211 | 1218 | 0 |
Ref26.5 gene: or0033; label: or0033; note: 11; | ORNL | BlastP | Ref. |
| Ref26.6 | RefCDS | - | 211 | 1218 | 0 |
Ref26.6 gene: or0033; label: or0033; product: possible transposase " ; function "KEGG top hit: 'mac:MA2701 category=Unassigned, evalue=4e-31, 29% identity hit'; function: PFAM: 'similar to model=Transposase_11 description=Transposase DDE domain evalue=2.6e-21 score=80.2' " ; function "COGs: 'Best hit=NMB1601 evalue=4e-24 score=109 category=L group=COG3039 IS5 transposase' ; codon_start: 1; transl_table: 11; evidence: not; note: "GENE MODEL=generation; note: NR Hit: 'similar to (AJ249381) putative transposase [Azotobacter vinelandii], evalue=0.00e+00, 100% identity hit '; glimmer=complement(211..1239): ; critica=complement(211..1218);: "; | ORNL | BlastP | Ref. |
| 26.5 | gene | - | 211 | 1218 | 5 |
26.5 gene: or0033; label: or0033; | ORNL | BlastP | Edit |
| 26.6 | CDS | - | 211 | 1218 | 5 |
26.6 gene: or0033; label: or0033; product: possible transposase "NR Hit: 'similar to (AJ249381) putative transposase [Azotobacter vinelandii], evalue=0.00e+00, 100% identity hit '; function: "KEGG top hit: 'mac:MA2701 category=Unassigned, evalue=4e-31, 29% identity hit'; function: PFAM: 'similar to model=Transposase_11 description=Transposase DDE domain evalue=2.6e-21 score=80.2' "; function: "COGs: 'Best hit=NMB1601 evalue=4e-24 score=109 category=L group=COG3039 IS5 transposase' ; codon_start: 1; transl_table: 11; evidence: not_experimental; note: "GENE MODEL=generation. critica agrees. model is 58aa longer than Pae best match but exactly matches Avi sequence previously published. glimmer uses TTG at 1239.; | ORNL | BlastP | Edit |
| Ref26.3 | Refgene | - | 1395 | 2033 | 0 |
Ref26.3 gene: 358#8.2 ; label: or0032 ; note "11"; | ORNL | BlastP | Ref. |
| Ref26.4 | RefCDS | - | 1395 | 2033 | 0 |
Ref26.4 gene: 358#8.2 ; label: or0032 ; note "GENE MODEL=critica; product: Putative IS3 transposase [SP:INF7_ECOLI] " ; function "KEGG top hit: 'ecj:JW2073 358#8.2 SP=INF7_ECOLI category=Unassigned, evalue=3e-83, 71% identity hit'; function: PFAM: 'similar to model=rve description=Integrase core domain evalue=6.2e-53 score=185.3' " ; function "COGs: 'Best hit=tra5_g5 evalue=6e-81 score=297 category=L group=COG2801 Putative transposase' ; codon_start: 1; transl_table: 11; evidence: not; note: NR Hit: similar to (X16664) Tnp protein [Escherichia coli], evalue=1.00e-83, 70% identity hit ; generation=complement(1395..1997): ; glimmer=complement(1395..1922): ; | ORNL | BlastP | Ref. |
| 26.3 | gene | - | 1395 | 2033 | 0 |
26.3 gene: 358#8.2 ; label: or0032 ; note "11"; | ORNL | BlastP | Edit |
| 26.4 | CDS | - | 1395 | 2033 | 0 |
26.4 gene: 358#8.2 ; label: or0032 ; note "GENE MODEL=critica; product: Putative IS3 transposase [SP:INF7_ECOLI] " ; function "KEGG top hit: 'ecj:JW2073 358#8.2 SP=INF7_ECOLI category=Unassigned, evalue=3e-83, 71% identity hit'; function: PFAM: 'similar to model=rve description=Integrase core domain evalue=6.2e-53 score=185.3' " ; function "COGs: 'Best hit=tra5_g5 evalue=6e-81 score=297 category=L group=COG2801 Putative transposase' ; codon_start: 1; transl_table: 11; evidence: not; note: NR Hit: similar to (X16664) Tnp protein [Escherichia coli], evalue=1.00e-83, 70% identity hit ; generation=complement(1395..1997): ; glimmer=complement(1395..1922): ; | ORNL | BlastP | Edit |
