| Scaffold 27 |
| Feature |
Type |
Strand |
Start |
Stop |
Confidence |
Note + |
ORNL |
BlastP |
Edit |
| Ref27.11 | Refmisc_feature | - | 1011 | 1076 | 0 |
Ref27.11 note: 11; note: 1 probable transmembrane helix predicted by TMHMM2.0; | None | None | Ref. |
| 27.11 | misc_feature | - | 1011 | 1076 | 0 |
27.11 note: 11; note: 1 probable transmembrane helix predicted by TMHMM2.0; | None | None | Edit |
| Ref27.5 | Refgene | - | 1204 | 1548 | 0 |
Ref27.5 gene: or0039; label: or0039; note: 13; | ORNL | BlastP | Ref. |
| Ref27.6 | RefCDS | - | 1204 | 1548 | 0 |
Ref27.6 gene: or0039; label: or0039; product: conserved hypothetical protein; function: KEGG top hit: 'pae:PA0320 category=Unassigned, evalue=2e-30, 53% identity hit'; function: PFAM: 'similar to model=tRNA_anti description=OB-fold nucleic acid binding domain evalue=1.9 score=-2.5' " ; function "COGs: 'Best hit=PA0320 evalue=6e-31 score=129 category=S group=COG3111 Uncharacterized ACR' ; codon_start: 1; transl_table: 11; evidence: not; note: "GENE MODEL=generation; note: NR Hit: 'similar to (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa] pir||A83605 conserved hypothetical protein PA0320 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG03709.1|AE004470_3 (AE004470) conserved hyp-TRUNCATED-, evalue=5.00e-30, 53% identity hit '; glimmer=complement(1204..1548): ; critica=complement(1204..1548);: "; | ORNL | BlastP | Ref. |
| 27.5 | gene | - | 1204 | 1548 | 0 |
27.5 gene: or0039; label: or0039; note: 13; | ORNL | BlastP | Edit |
| 27.6 | CDS | - | 1204 | 1548 | 0 |
27.6 gene: or0039; label: or0039; product: conserved hypothetical protein; function: KEGG top hit: 'pae:PA0320 category=Unassigned, evalue=2e-30, 53% identity hit'; function: PFAM: 'similar to model=tRNA_anti description=OB-fold nucleic acid binding domain evalue=1.9 score=-2.5' " ; function "COGs: 'Best hit=PA0320 evalue=6e-31 score=129 category=S group=COG3111 Uncharacterized ACR' ; codon_start: 1; transl_table: 11; evidence: not; note: "GENE MODEL=generation; note: NR Hit: 'similar to (NC_002516) conserved hypothetical protein [Pseudomonas aeruginosa] pir||A83605 conserved hypothetical protein PA0320 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG03709.1|AE004470_3 (AE004470) conserved hyp-TRUNCATED-, evalue=5.00e-30, 53% identity hit '; glimmer=complement(1204..1548): ; critica=complement(1204..1548);: "; | ORNL | BlastP | Edit |
| Ref27.10 | Refmisc_feature | - | 1489 | 1548 | 0 |
Ref27.10 note: 11; note: Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 1.000) with cleavage site probability 0.908 at residue 20; | None | None | Ref. |
| 27.10 | misc_feature | - | 1489 | 1548 | 0 |
27.10 note: 11; note: Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 1.000) with cleavage site probability 0.908 at residue 20; | None | None | Edit |
| Ref27.9 | Refmisc_feature | - | 2289 | 2378 | 0 |
Ref27.9 note: 11; note: Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 0.998) with cleavage site probability 0.924 at residue 30; | None | None | Ref. |
| 27.9 | misc_feature | - | 2289 | 2378 | 0 |
27.9 note: 11; note: Signal predicted by SignalP 2.0 HMM (Signal peptide probabilty 0.998) with cleavage site probability 0.924 at residue 30; | None | None | Edit |
| Ref27.1 | Refgene | - | 2547 | 2672 | 0 |
Ref27.1 gene: or0037; label: or0037; note: 0; | ORNL | BlastP | Ref. |
| Ref27.2 | RefCDS | - | 2547 | 2672 | 0 |
Ref27.2 gene: or0037; label: or0037; product: hypothetical; codon_start: 1; transl_table: 11; evidence: not; note: "GENE MODEL=generation; glimmer=complement(2547..2672): ; critica=complement(2547..2672);: "; | ORNL | BlastP | Ref. |
| 27.1 | gene | - | 2547 | 2672 | 0 |
27.1 gene: or0037; label: or0037; note: 0; | ORNL | BlastP | Edit |
| 27.2 | CDS | - | 2547 | 2672 | 0 |
27.2 gene: or0037; label: or0037; product: hypothetical; codon_start: 1; transl_table: 11; evidence: not; note: "GENE MODEL=generation; glimmer=complement(2547..2672): ; critica=complement(2547..2672);: "; | ORNL | BlastP | Edit |
| 27 | Component | | 1 | 2774 | 0 |
27 | None | None | Edit |
| Ref27.7 | Refgene | - | 180 | 1175 | 0 |
Ref27.7 gene: or0040; label: or0040; note: 13; | ORNL | BlastP | Ref. |
| Ref27.8 | RefCDS | - | 180 | 1175 | 0 |
Ref27.8 gene: or0040; label: or0040; product: conserved hypothetical protein; function: KEGG top hit: 'pae:PA0327 category=Unassigned, evalue=1e-98, 63% identity hit'; function: PFAM: 'similar to model=NHL description=NHL repeat evalue=0.99 score=7.1' " ; function "COGs: 'Best hit=PA0327 evalue=2e-81 score=300 category=S group=COG3204 Uncharacterized BCR' ; codon_start: 1; transl_table: 11; evidence: not; note: "GENE MODEL=critica; note: NR Hit: 'similar to (NC_002516) hypothetical protein [Pseudomonas aeruginosa] pir||H83605 hypothetical protein PA0327 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG03716.1|AE004470_10 (AE004470) hypothetical protein [Pseudomona-TRUNCATED-, evalue=3.00e-98, 63% identity hit '; glimmer=complement(180..1124);: "; | ORNL | BlastP | Ref. |
| 27.7 | gene | - | 180 | 1175 | 0 |
27.7 gene: or0040; label: or0040; note: 13; | ORNL | BlastP | Edit |
| 27.8 | CDS | - | 180 | 1175 | 0 |
27.8 gene: or0040; label: or0040; product: conserved hypothetical protein; function: KEGG top hit: 'pae:PA0327 category=Unassigned, evalue=1e-98, 63% identity hit'; function: PFAM: 'similar to model=NHL description=NHL repeat evalue=0.99 score=7.1' " ; function "COGs: 'Best hit=PA0327 evalue=2e-81 score=300 category=S group=COG3204 Uncharacterized BCR' ; codon_start: 1; transl_table: 11; evidence: not; note: "GENE MODEL=critica; note: NR Hit: 'similar to (NC_002516) hypothetical protein [Pseudomonas aeruginosa] pir||H83605 hypothetical protein PA0327 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG03716.1|AE004470_10 (AE004470) hypothetical protein [Pseudomona-TRUNCATED-, evalue=3.00e-98, 63% identity hit '; glimmer=complement(180..1124);: "; | ORNL | BlastP | Edit |
| Ref27.3 | Refgene | - | 1713 | 2378 | 0 |
Ref27.3 gene: or0038; label: or0038; note: 11; | ORNL | BlastP | Ref. |
